Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011163.1 Corchorus olitorius cultivar O-4 contig11196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3508
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29


Found at i:247 original size:29 final size:29

Alignment explanation


    Indices: 205--263  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        195 ACTTAGTCTC

                                         
        205 AACGAGCCTAATCTCTTATACATGATTTA
          1 AACGAGCCTAATCTCTTATACATGATTTA

                                         
        234 AACGAGCCTAATCTCTTATACATGATTTA
          1 AACGAGCCTAATCTCTTATACATGATTTA

             
        263 A
          1 A

        264 TTGCGAAATC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34


Consensus pattern (29 bp):   
AACGAGCCTAATCTCTTATACATGATTTA

Found at i:3107 original size:23 final size:23

Alignment explanation


    Indices: 3081--3128  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       3071 CATTCAACAG

                                   
       3081 GAGCAGCTCAAACCATTACATTA
          1 GAGCAGCTCAAACCATTACATTA

                                   
       3104 GAGCAGCTCAAACCATTACATTA
          1 GAGCAGCTCAAACCATTACATTA

              
       3127 GA
          1 GA

       3129 TTCGGGTTCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.40, C:0.25, G:0.15, T:0.21


Consensus pattern (23 bp):   
GAGCAGCTCAAACCATTACATTA
Done.