Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011164.1 Corchorus olitorius cultivar O-4 contig11197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2356
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29


Found at i:1376 original size:19 final size:19

Alignment explanation


    Indices: 1354--1392  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1344 GGACTAGAAG

                               
       1354 AAAGGAAATAGCCAATTGC
          1 AAAGGAAATAGCCAATTGC

                               
       1373 AAAGGAAATAGCCAATTGC
          1 AAAGGAAATAGCCAATTGC

             
       1392 A
          1 A

       1393 GGGTAAGGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.49, C:0.15, G:0.21, T:0.15


Consensus pattern (19 bp):   
AAAGGAAATAGCCAATTGC
Done.