Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011165.1 Corchorus olitorius cultivar O-4 contig11198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1930
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:199 original size:18 final size:18

Alignment explanation


    Indices: 176--211  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        166 ATCATACTAT

                              
        176 AGTAATTTAATACACATA
          1 AGTAATTTAATACACATA

                              
        194 AGTAATTTAATACACATA
          1 AGTAATTTAATACACATA

        212 GAAATTAGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33


Consensus pattern (18 bp):   
AGTAATTTAATACACATA
Done.