Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011168.1 Corchorus olitorius cultivar O-4 contig11201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2822
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:2063 original size:22 final size:22

Alignment explanation


    Indices: 2035--2081  Score: 94
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2025 TCCTCATCCA

                                  
       2035 TAAGAAAAGGAAAAGACAGAGT
          1 TAAGAAAAGGAAAAGACAGAGT

                                  
       2057 TAAGAAAAGGAAAAGACAGAGT
          1 TAAGAAAAGGAAAAGACAGAGT

               
       2079 TAA
          1 TAA

       2082 CTTCCCCGGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.60, C:0.04, G:0.26, T:0.11


Consensus pattern (22 bp):   
TAAGAAAAGGAAAAGACAGAGT
Done.