Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011180.1 Corchorus olitorius cultivar O-4 contig11213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43464

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1102--1163
22
2.8
23
81
13
76
40
11
11
37
1.77
1174--1295
22
5.5
22
72
7
86
44
9
11
35
1.72
1174--1296
44
2.8
44
81
6
142
43
8
12
34
1.73
1340--1391
23
2.3
22
83
3
59
42
1
26
28
1.66
1350--1392
22
1.9
23
90
4
70
39
2
25
32
1.69
1350--1414
22
3.0
20
82
10
60
43
4
21
30
1.73
1434--1669
22
10.7
22
72
7
129
33
10
16
38
1.84
1530--1655
66
1.9
66
83
3
164
37
11
14
37
1.81
11276--11356
39
2.0
40
92
2
137
50
8
3
37
1.51
11347--11393
25
1.9
24
95
4
85
29
6
8
55
1.55
11465--11878
206
2.0
205
94
1
733
37
10
7
44
1.68
12399--12468
36
1.9
36
88
0
104
61
8
8
21
1.52
25098--25127
2
15.0
2
92
0
51
53
0
0
46
1.00
27699--27725
2
13.5
2
100
0
54
0
51
0
48
1.00
38835--38865
14
2.2
14
94
0
53
16
22
0
61
1.34
39042--39070
5
5.8
5
100
0
58
17
0
0
82
0.66
39903--39944
7
6.0
7
100
0
84
28
28
28
14
1.95
42530--42556
13
2.1
13
100
0
54
33
22
22
22
1.97

Tables:   1

The End!