Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011200.1 Corchorus olitorius cultivar O-4 contig11233, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4272
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30


Found at i:3494 original size:15 final size:16

Alignment explanation


    Indices: 3470--3509  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       3460 AGAGGTTGAA

                 *          
       3470 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                            
       3485 AGAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
       3501 AGAAAACAA
          1 AGAAAACAA

       3510 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.