Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011205.1 Corchorus olitorius cultivar O-4 contig11238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10100
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31


Found at i:5412 original size:28 final size:28

Alignment explanation


    Indices: 5371--5461  Score: 130
    Period size: 28  Copynumber: 3.2  Consensus size: 28

       5361 TTGAAGTGAC

                             *          
       5371 CCAAAATGCCCCTGGATGTGCAAAATGA
          1 CCAAAATGCCCCTGGATATGCAAAATGA

            *                           
       5399 TCAAAATGCCCCTGGATATGCAAAATGA
          1 CCAAAATGCCCCTGGATATGCAAAATGA

                      **                 
       5427 CCAAAATGCCATTGG-TCATGCAAAATGA
          1 CCAAAATGCCCCTGGAT-ATGCAAAATGA

                   
       5455 CCAAAAT
          1 CCAAAAT

       5462 AAGAAGTAAA


Statistics
Matches: 57,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  27    1  0.02
  28   56  0.98

ACGTcount: A:0.40, C:0.23, G:0.18, T:0.20


Consensus pattern (28 bp):   
CCAAAATGCCCCTGGATATGCAAAATGA
Done.