Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011208.1 Corchorus olitorius cultivar O-4 contig11241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17920

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2899--2929
15
2.1
15
93
0
53
25
12
9
51
1.70
2923--2962
2
19.5
2
84
5
53
47
0
2
50
1.14
4026--4087
31
2.0
31
93
0
106
29
22
6
41
1.78
4123--4307
93
2.0
93
89
0
280
32
12
2
51
1.52
7031--7176
22
6.6
22
79
7
143
39
18
12
30
1.87
7031--7176
66
2.2
66
83
3
177
39
18
12
30
1.87
7030--7176
44
3.3
43
81
5
161
38
18
12
29
1.88
7184--7265
22
3.8
22
74
9
78
42
14
9
32
1.79
7482--7603
22
5.5
22
75
7
90
33
12
13
40
1.81
9334--9537
22
9.2
22
71
7
117
38
19
11
30
1.86
9334--9537
44
4.6
45
71
7
148
38
19
11
30
1.86
9471--9517
23
2.1
22
84
7
60
42
19
14
23
1.88
9566--9614
22
2.2
23
86
13
68
34
24
2
38
1.67
10494--10653
1
160.0
1
74
0
140
0
0
12
87
0.54
10494--10653
7
23.4
7
88
9
178
0
0
12
87
0.54
10499--10653
8
19.5
8
89
9
182
0
0
12
87
0.54
10494--10653
44
3.6
44
85
13
204
0
0
12
87
0.54
11677--11709
15
2.2
15
100
0
66
54
0
6
39
1.25

Tables:   1

The End!