Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011209.1 Corchorus olitorius cultivar O-4 contig11242, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39


Found at i:855 original size:154 final size:154

Alignment explanation


    Indices: 575--1143  Score: 933
    Period size: 154  Copynumber: 3.7  Consensus size: 154

        565 TTCGTATCAC

                         *   *           ** *                                
        575 TTATTTTGGGCCTTTCGAGGCCCATTAGTTTCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA
          1 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAA

            *  *            *       *                  *         *           
        640 AGCATTTCTTTCCATTTTTTATGGACTAACTATAATCATTTTGGTGAGATTAGACCACTGTGAAG
         66 GGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGATGAGATTAGTCCACTGTGAAG

                                    
        705 TTTTTAGCTCATTTGGAACACTTG
        131 TTTTTAGCTCATTTGGAACACTTG

                                                                      *      
        729 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAGCCTCAA
          1 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAA

                                         *                                   
        794 GGCTTTTCTTTCCATTGTTTATGGCCTAAGTATAATCATTTTGATGAGATTAGTCCACTGTGAAG
         66 GGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGATGAGATTAGTCCACTGTGAAG

                       *            
        859 TTTTTAGCTCACTTGGAACACTTG
        131 TTTTTAGCTCATTTGGAACACTTG

                                                                      *      
        883 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAATCCTCAA
          1 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAA

                                         *                                   
        948 GGCTTTTCTTTCCATTG-TTATGGCCTAAGTATAATCATTTTGATGAGATTAGTCCACTGTGAAG
         66 GGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGATGAGATTAGTCCACTGTGAAG

                                    
       1012 TTTTTAGCTCATTTGGAACACTTG
        131 TTTTTAGCTCATTTGGAACACTTG

                              *                            *                 
       1036 TTATTTTGGGCCTATCGGAGCCCATTAGTGACATTTTGAATCGTCTTTGATTTGGCAAACCTCAA
          1 TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAA

            *           *                   *     *    
       1101 TGCTTTTCTTTCAATTGTTTATGGCCTAACTAAAATCAATTTG
         66 GGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTG

       1144 GTG


Statistics
Matches: 390,  Mismatches: 24, Indels: 2
        0.94            0.06        0.00

Matches are distributed among these distances:
 153  147  0.38
 154  243  0.62

ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40


Consensus pattern (154 bp):   
TTATTTTGGGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAA
GGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGATGAGATTAGTCCACTGTGAAG
TTTTTAGCTCATTTGGAACACTTG

Done.