Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011215.1 Corchorus olitorius cultivar O-4 contig11248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5000
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:3715 original size:32 final size:32

Alignment explanation


    Indices: 3677--3766  Score: 144
    Period size: 32  Copynumber: 2.8  Consensus size: 32

       3667 TCAGAACTAA

                                 *          
       3677 GCCTCCATAACTGCCGTACATTCATTAACAAG
          1 GCCTCCATAACTGCCGTACATACATTAACAAG

                                         *  
       3709 GCCTCCATAACTGCCGTACATACATTAACGAG
          1 GCCTCCATAACTGCCGTACATACATTAACAAG

                          *  *        
       3741 GCCTCCATAACTGCAGTTCATACATT
          1 GCCTCCATAACTGCCGTACATACATT

       3767 CACAGGGCAC


Statistics
Matches: 54,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   54  1.00

ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26


Consensus pattern (32 bp):   
GCCTCCATAACTGCCGTACATACATTAACAAG

Done.