Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011218.1 Corchorus olitorius cultivar O-4 contig11251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37925

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1862--2577
43
16.5
43
82
9
834
20
26
17
35
1.95
1862--2577
261
2.7
258
90
4
1109
20
26
17
35
1.95
1862--2546
131
5.3
130
88
3
1003
20
25
18
35
1.95
2609--2855
48
5.1
49
88
3
324
12
21
21
44
1.85
11975--12801
418
2.0
419
95
0
1485
29
21
13
35
1.91
25077--25136
29
2.0
30
87
6
86
35
18
8
38
1.81
26976--27030
21
2.6
21
85
0
74
16
21
45
16
1.85
30095--30177
24
3.5
23
83
9
96
30
13
8
48
1.72
30095--30164
24
3.0
24
89
2
97
34
14
10
41
1.79
30097--30174
23
3.3
23
91
3
120
29
14
8
47
1.74
30520--30559
15
2.6
16
88
4
55
62
12
10
15
1.54
31938--31997
29
2.0
30
87
6
86
35
18
8
38
1.81
33964--33999
18
2.0
18
89
10
56
41
8
16
33
1.78

Tables:   1

The End!