Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011221.1 Corchorus olitorius cultivar O-4 contig11254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1468
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29


Found at i:1025 original size:21 final size:21

Alignment explanation


    Indices: 999--1111  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        989 TGCTAGAAGT

                                 
        999 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                                 
       1020 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                       *        *
       1041 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGCAAGTTCCAAGC

                                 *
       1062 TCATTGGAG-AAGGTTCCAAGA
          1 TCATTGGAGCAA-GTTCCAAGC

                            *  *  
       1083 TCATTGGAG-AAGGTTTCATGC
          1 TCATTGGAGCAA-GTTCCAAGC

                    
       1104 TCATTGGA
          1 TCATTGGA

       1112 AATGCCTAAG


Statistics
Matches: 84,  Mismatches: 7, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
  20    1  0.01
  21   83  0.99

ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGCAAGTTCCAAGC

Done.