Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011225.1 Corchorus olitorius cultivar O-4 contig11258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4753
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1942 original size:51 final size:51

Alignment explanation


    Indices: 1850--2035  Score: 266
    Period size: 52  Copynumber: 3.6  Consensus size: 51

       1840 ATTGAAAACT

                    *                                            
       1850 AAAACCTGGTGGGAACTTTCCCAATTTGCAAAAGAGCTAGATTGAATACTTTG
          1 AAAA-CTGATGGGAACTTTCCCAATTTG-AAAAGAGCTAGATTGAATACTTTG

                       *           *          *             *  
       1903 AAAACTGATGGAAACTTTCCCAAGTTGAAAAGAGGTAGATTGAATACTCTG
          1 AAAACTGATGGGAACTTTCCCAATTTGAAAAGAGCTAGATTGAATACTTTG

                                       *          *            *
       1954 AAAACTTGATGGGAACTTTCCCAATTTAAAAAGAGCTAAATTGAATAC-TTA
          1 AAAAC-TGATGGGAACTTTCCCAATTTGAAAAGAGCTAGATTGAATACTTTG

                                           
       2005 AAAACTGATGGGAACTTTCCCAATTTGAAAA
          1 AAAACTGATGGGAACTTTCCCAATTTGAAAA

       2036 CTTAAACCTG


Statistics
Matches: 119,  Mismatches: 13, Indels: 5
        0.87            0.09        0.04

Matches are distributed among these distances:
  50   25  0.21
  51   33  0.28
  52   57  0.48
  53    4  0.03

ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27


Consensus pattern (51 bp):   
AAAACTGATGGGAACTTTCCCAATTTGAAAAGAGCTAGATTGAATACTTTG

Done.