Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011230.1 Corchorus olitorius cultivar O-4 contig11263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56891

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3416--3541
27
4.7
27
90
0
180
37
25
19
18
1.94
5055--5108
26
2.1
26
92
0
90
38
14
12
33
1.85
6662--6715
17
3.2
17
89
0
90
22
42
1
33
1.64
9383--9505
41
3.0
40
83
4
147
28
10
13
47
1.76
22494--22573
42
1.9
42
97
0
151
46
31
0
22
1.52
23115--24094
439
2.2
440
88
3
1447
25
12
18
43
1.85
26879--26905
13
2.1
13
100
0
54
14
7
37
40
1.74
29070--29136
30
2.2
30
84
5
91
20
44
2
31
1.67
33403--33434
2
16.0
2
100
0
64
50
0
0
50
1.00
33518--33561
17
2.6
16
86
10
61
34
27
18
20
1.96
37906--37946
21
1.9
22
85
5
57
60
2
2
34
1.23
40263--40296
2
16.5
2
87
6
50
47
2
0
50
1.16
40685--40831
49
3.0
49
93
0
258
42
9
5
42
1.60
41735--41799
31
2.1
31
97
0
121
29
12
10
47
1.75
44982--45020
19
2.1
18
85
4
51
30
20
5
43
1.73
53016--53059
15
2.9
15
86
10
63
50
0
50
0
1.00
56055--56119
27
2.4
27
92
0
103
24
1
16
56
1.49
56832--56884
16
3.2
16
78
5
61
5
39
1
52
1.36

Tables:   1

The End!