Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011236.1 Corchorus olitorius cultivar O-4 contig11269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30752

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1862--1931
36
1.9
36
91
0
113
21
10
8
60
1.55
3415--3479
31
2.1
31
83
11
80
32
20
15
32
1.93
3912--4329
210
2.0
203
91
5
671
44
8
11
36
1.70
4439--4519
39
2.0
40
88
2
119
34
3
9
51
1.53
13558--13609
25
2.1
25
100
0
104
73
3
7
15
1.21
17459--17519
17
3.6
17
81
0
68
36
29
22
11
1.90
28407--28501
45
2.1
45
88
1
138
33
5
21
40
1.75
28793--28897
51
2.1
51
100
0
210
40
9
13
37
1.77

Tables:   1

The End!