Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011239.1 Corchorus olitorius cultivar O-4 contig11272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29567

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1683--1717
11
3.2
11
91
0
61
0
2
17
80
0.84
3023--3056
2
18.0
2
88
11
54
47
0
0
52
1.00
4459--4516
25
2.3
25
85
8
73
41
10
13
34
1.79
6006--6068
31
2.0
31
93
0
108
26
9
20
42
1.83
7894--7955
15
4.0
15
82
15
81
33
16
0
50
1.45
7895--7946
6
9.3
6
84
16
76
34
15
0
50
1.45
7898--7959
9
6.7
9
81
7
70
33
17
0
48
1.48
9770--9812
21
2.0
21
100
0
86
34
4
32
27
1.78
22690--22730
19
2.2
19
86
8
57
48
12
12
26
1.75
25253--25287
3
11.7
3
88
11
54
65
0
0
34
0.93
25442--25561
22
5.5
21
76
5
78
35
15
9
40
1.78

Tables:   1

The End!