Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001124.1 Corchorus olitorius cultivar O-4 contig01124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 772

Length: 1287
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28


Found at i:1023 original size:17 final size:17

Alignment explanation


    Indices: 984--1027  Score: 61
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        974 AATATAACGT

                   *        *
        984 TATAAGATATATAAATC
          1 TATAAGAAATATAAATA

             *               
       1001 TGTAAGAAATATAAATA
          1 TATAAGAAATATAAATA

                      
       1018 TATAAGAAAT
          1 TATAAGAAAT

       1028 CAAAAGATAT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  17   23  1.00

ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32


Consensus pattern (17 bp):   
TATAAGAAATATAAATA
Done.