Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011246.1 Corchorus olitorius cultivar O-4 contig11279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38343

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--37
2
18.0
2
94
5
65
48
2
0
48
1.15
10946--10981
13
2.6
14
86
8
56
36
5
16
41
1.72
13867--13918
19
2.8
20
77
11
65
51
0
1
46
1.12
13871--13922
16
3.1
16
76
15
52
53
0
1
44
1.11
15262--15363
51
2.0
50
80
12
111
21
21
13
43
1.87
17405--17463
30
2.0
30
89
0
91
42
6
27
23
1.79
17560--17599
21
2.0
20
85
5
53
12
10
10
67
1.42
31048--31115
33
2.1
33
100
0
136
27
7
26
38
1.83
34703--34745
20
2.2
20
83
8
52
16
23
13
46
1.83
35353--35671
32
9.9
32
88
0
440
28
21
18
31
1.97
35353--35680
129
2.6
129
89
1
426
28
21
18
31
1.97
35390--35680
161
1.8
161
87
2
415
29
20
17
31
1.96
36364--36480
33
3.5
33
85
6
148
13
30
13
41
1.83
36364--36496
33
4.0
33
84
1
142
13
30
14
42
1.84
36371--36496
66
1.9
66
85
3
173
14
30
14
41
1.85

Tables:   1

The End!