Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011248.1 Corchorus olitorius cultivar O-4 contig11281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2411
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2166 original size:22 final size:22

Alignment explanation


    Indices: 2141--2193  Score: 70
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       2131 AAATCAAACT

                       **   *     
       2141 AACAATTAAGACTATTTAAGAA
          1 AACAATTAAGAAAATTAAAGAA

                  *               
       2163 AACAATCAAGAAAATTAAAGAA
          1 AACAATTAAGAAAATTAAAGAA

                     
       2185 AACAATTAA
          1 AACAATTAA

       2194 TCAGAAAGCA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.62, C:0.09, G:0.08, T:0.21


Consensus pattern (22 bp):   
AACAATTAAGAAAATTAAAGAA
Done.