Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011253.1 Corchorus olitorius cultivar O-4 contig11286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4029
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:723 original size:30 final size:30

Alignment explanation


    Indices: 667--723  Score: 73
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        657 CAAATGACTT

                                 *        
        667 TGTTTCTGATCATAAATTCTGTAACTCTTC
          1 TGTTTCTGATCATAAATTCTGAAACTCTTC

                                         
        697 TGTTTCTGATGTC-TAAATTC-GAAACTC
          1 TGTTTCTGA--TCATAAATTCTGAAACTC

        724 GTTATTCTTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  30   15  0.62
  31    7  0.29
  32    2  0.08

ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44


Consensus pattern (30 bp):   
TGTTTCTGATCATAAATTCTGAAACTCTTC
Done.