Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011256.1 Corchorus olitorius cultivar O-4 contig11289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1563
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:1202 original size:2 final size:2

Alignment explanation


    Indices: 1195--1225  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1185 GGTAATTTCA

                                                           
       1195 CT CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

       1226 TATATATATA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   27  0.96

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
CT

Done.