Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011259.1 Corchorus olitorius cultivar O-4 contig11292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2111
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:496 original size:21 final size:21

Alignment explanation


    Indices: 470--561  Score: 141
    Period size: 21  Copynumber: 4.4  Consensus size: 21

        460 TGCTAGAAGT

                                 
        470 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                                 
        491 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                       *        *
        512 TCATTGGAGCAGGTTCCAAGA
          1 TCATTGGAGCAAGTTCCAAGC

                            *     
        533 TCATTGGAG-AAGGTTTCAAGC
          1 TCATTGGAGCAA-GTTCCAAGC

                    
        554 TCATTGGA
          1 TCATTGGA

        562 AATGCCTAAG


Statistics
Matches: 65,  Mismatches: 5, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   64  0.98

ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGCAAGTTCCAAGC

Done.