Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011261.1 Corchorus olitorius cultivar O-4 contig11294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76484

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1458--1517
29
2.0
30
90
3
95
46
1
0
51
1.10
1483--1532
18
2.6
19
76
17
59
46
0
0
54
1.00
3047--3102
29
1.9
29
96
0
103
42
30
5
21
1.75
3252--3298
2
24.5
2
83
16
64
46
0
2
51
1.13
19941--19996
25
2.4
23
88
11
80
48
8
7
35
1.62
22864--23749
435
2.0
432
84
4
1149
31
16
12
39
1.86
27015--27059
21
2.1
21
83
0
54
35
24
4
35
1.76
28184--28281
30
3.3
30
80
0
124
27
18
30
23
1.98
29860--29890
12
2.7
12
95
5
55
35
12
19
32
1.90
29860--29919
29
2.0
31
83
6
79
35
10
18
36
1.84
29952--29980
11
2.6
11
100
0
58
44
31
17
6
1.75
31291--31332
15
2.7
15
92
3
66
14
7
14
64
1.48
43878--44023
71
2.1
70
81
12
165
26
10
3
58
1.47
48814--48881
23
3.0
23
67
4
57
73
1
20
4
1.08
70887--70927
6
6.8
6
88
0
64
0
46
0
53
1.00
74735--74766
15
2.1
15
100
0
64
34
18
18
28
1.95
75826--75887
31
2.0
31
96
0
115
29
20
6
43
1.77
75959--75997
14
2.8
14
88
7
53
23
10
2
64
1.37
75902--76066
85
2.0
83
91
2
267
33
12
2
51
1.53

Tables:   1

The End!