Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011262.1 Corchorus olitorius cultivar O-4 contig11295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3739
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:1787 original size:22 final size:22

Alignment explanation


    Indices: 1759--1806  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       1749 ATGAAATGCC

                                  
       1759 TACTTTCGGAACCTCTTTCTCT
          1 TACTTTCGGAACCTCTTTCTCT

                                  
       1781 TACTTTCGGAACCTCTTTCTCT
          1 TACTTTCGGAACCTCTTTCTCT

                
       1803 TACT
          1 TACT

       1807 ATTAAGCAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46


Consensus pattern (22 bp):   
TACTTTCGGAACCTCTTTCTCT
Done.