Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011263.1 Corchorus olitorius cultivar O-4 contig11296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38


Found at i:705 original size:17 final size:17

Alignment explanation


    Indices: 685--718  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        675 AGGGATTCAC

                             
        685 ATGTGTATGGGATCTGT
          1 ATGTGTATGGGATCTGT

                  *          
        702 ATGTGTTTGGGATCTGT
          1 ATGTGTATGGGATCTGT

        719 TTCTTTGGTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.15, C:0.06, G:0.35, T:0.44


Consensus pattern (17 bp):   
ATGTGTATGGGATCTGT
Done.