Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011268.1 Corchorus olitorius cultivar O-4 contig11301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4621
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32


Found at i:4130 original size:104 final size:105

Alignment explanation


    Indices: 3940--4131  Score: 269
    Period size: 104  Copynumber: 1.8  Consensus size: 105

       3930 CTGCTTTGTG

                               * *              *            *             * 
       3940 CTTTCTAAACTACACTAAATAGCTATTGAGAAACCATTATAAGTGAGTGGATTATGCGTTGTTGC
          1 CTTTCTAAACTACACTAAACAACTATTGAGAAACCACTATAAGTGAGTGAATTATGCGTTGTTAC

              *  *       *                          
       4005 TTGGACATTACAGGTGTTCAATTATCCTAAATTAAACCCA
         66 TTAGAAATTACAGCTGTTCAATTATCCTAAATTAAACCCA

                *   *                                               *       *
       4045 CTTTGTAACCTACACTAAACAACTATTGAG-AACCACTATAAGTGAGTGAATTATGTGTTGTTAT
          1 CTTTCTAAACTACACTAAACAACTATTGAGAAACCACTATAAGTGAGTGAATTATGCGTTGTTAC

                                   
       4109 TTAGAAATTACAGCTGTTCAATT
         66 TTAGAAATTACAGCTGTTCAATT

       4132 GCATGCAAAG


Statistics
Matches: 75,  Mismatches: 12, Indels: 1
        0.85            0.14        0.01

Matches are distributed among these distances:
 104   49  0.65
 105   26  0.35

ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Consensus pattern (105 bp):   
CTTTCTAAACTACACTAAACAACTATTGAGAAACCACTATAAGTGAGTGAATTATGCGTTGTTAC
TTAGAAATTACAGCTGTTCAATTATCCTAAATTAAACCCA
Done.