Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011272.1 Corchorus olitorius cultivar O-4 contig11305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7469
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:4711 original size:17 final size:18

Alignment explanation


    Indices: 4689--4723  Score: 54
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       4679 TTGAAATAAT

                              
       4689 TCTTCAAA-ATCTTCAAG
          1 TCTTCAAATATCTTCAAG

                              
       4706 TCTTCAAATTATCTTCAA
          1 TCTTCAAA-TATCTTCAA

       4724 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    8  0.50
  19    8  0.50

ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40


Consensus pattern (18 bp):   
TCTTCAAATATCTTCAAG

Done.