genome.fa.s11283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011283.1 Corchorus olitorius cultivar O-4 contig11316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32992

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050--3097	24	2.0	25	83	4	62	16	6	6	70	1.28
3647--3708	31	2.0	31	100	0	124	12	29	16	41	1.85
8586--8695	21	5.2	21	86	0	148	40	21	13	24	1.90
9548--9606	15	4.2	14	85	14	70	33	5	11	49	1.62
9825--9867	10	4.1	10	80	11	50	65	0	6	27	1.18
9921--9966	25	1.9	24	86	8	67	39	17	36	6	1.76
10204--10280	37	2.1	37	95	0	136	35	7	20	36	1.82
10269--10348	41	2.0	41	97	0	151	35	11	15	38	1.83
10398--10433	18	2.0	18	100	0	72	44	5	11	38	1.63
15070--15146	37	2.1	37	92	0	127	35	7	19	37	1.81
18202--18283	5	16.4	5	77	5	85	37	37	18	6	1.76
21881--21935	17	3.2	17	78	17	60	38	20	20	21	1.94
24108--24159	20	2.6	20	100	0	104	42	23	25	9	1.84
25307--25370	31	2.3	26	72	23	65	43	6	18	31	1.75
29731--30154	7	60.4	7	98	0	731	25	0	16	56	1.42
30290--30367	33	2.4	33	88	0	111	32	5	17	44	1.71
30472--30729	54	4.8	53	85	6	317	35	21	15	28	1.93
30486--30729	107	2.3	107	89	2	330	35	21	15	27	1.94
30829--31221	37	10.6	37	73	4	276	43	13	18	24	1.87
30826--31221	74	5.4	74	84	3	501	43	13	18	24	1.87
30829--31221	147	2.7	148	81	4	479	43	13	18	24	1.87
30895--31242	111	3.1	109	79	5	387	42	13	19	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31993--32162	87	2.0	87	87	0	250	27	25	11	35	1.90
32295--32367	4	18.8	4	74	25	52	2	19	1	76	0.98
32294--32337	13	3.7	12	85	14	56	4	20	0	75	0.98
32301--32337	13	2.8	13	88	12	58	5	21	0	72	1.04
32294--32367	29	2.7	26	77	20	80	2	18	1	77	0.97
32294--32367	10	6.7	11	76	19	59	2	18	1	77	0.97

Tables:   1

The End!