Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011286.1 Corchorus olitorius cultivar O-4 contig11319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4243
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:1620 original size:22 final size:23

Alignment explanation


    Indices: 1595--1646  Score: 72
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       1585 TTCTACATTT

                       *           
       1595 GCATTTATGT-CATTCACTTTTG
          1 GCATTTATGTAAATTCACTTTTG

                                  *
       1617 GCATTTA-GTAAATTCACTTTTT
          1 GCATTTATGTAAATTCACTTTTG

                    
       1639 GCATTTAT
          1 GCATTTAT

       1647 TATAACATAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  21    2  0.08
  22   24  0.92

ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50


Consensus pattern (23 bp):   
GCATTTATGTAAATTCACTTTTG
Done.