Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011288.1 Corchorus olitorius cultivar O-4 contig11321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6119
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:2823 original size:25 final size:25

Alignment explanation


    Indices: 2789--2840  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2779 ATAATTGGCC

                                     
       2789 ATAGACTAGAGAAATCAGTGAAGGA
          1 ATAGACTAGAGAAATCAGTGAAGGA

                                     
       2814 ATAGACTAGAGAAATCAGTGAAGGA
          1 ATAGACTAGAGAAATCAGTGAAGGA

              
       2839 AT
          1 AT

       2841 TTATTAAATT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.48, C:0.08, G:0.27, T:0.17


Consensus pattern (25 bp):   
ATAGACTAGAGAAATCAGTGAAGGA
Done.