Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011290.1 Corchorus olitorius cultivar O-4 contig11323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3328
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:431 original size:22 final size:22

Alignment explanation


    Indices: 389--431  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        379 TTTCTAATTA

                           **     
        389 ATTGTTTTCTTAGATTTTCTTG
          1 ATTGTTTTCTTAGATAGTCTTG

                         *       
        411 ATTGTTTTCTTAGGTAGTCTT
          1 ATTGTTTTCTTAGATAGTCTT

        432 AATTACTAGT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.14, C:0.09, G:0.16, T:0.60


Consensus pattern (22 bp):   
ATTGTTTTCTTAGATAGTCTTG

Found at i:879 original size:19 final size:18

Alignment explanation


    Indices: 855--890  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        845 TGAAGATTTA

                               
        855 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                    *        
        874 TTGAAGACCATTGAAGA
          1 TTGAAGACAATTGAAGA

        891 AATATTTCCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT
Done.