Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011292.1 Corchorus olitorius cultivar O-4 contig11325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2092
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:1447 original size:19 final size:19

Alignment explanation


    Indices: 1419--1464  Score: 74
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       1409 TGAGTTCAGT

                 *           * 
       1419 GAGAATAGGTGTTGATGGA
          1 GAGAAAAGGTGTTGATGAA

                               
       1438 GAGAAAAGGTGTTGATGAA
          1 GAGAAAAGGTGTTGATGAA

                    
       1457 GAGAAAAG
          1 GAGAAAAG

       1465 TCTGTGTGTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20


Consensus pattern (19 bp):   
GAGAAAAGGTGTTGATGAA
Done.