Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000113.1 Corchorus olitorius cultivar O-4 contig00113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2443
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38


Found at i:1067 original size:12 final size:12

Alignment explanation


    Indices: 1050--1076  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1040 GCAATTCTGA

                        
       1050 TTAAACCAAAAC
          1 TTAAACCAAAAC

                        
       1062 TTAAACCAAAAC
          1 TTAAACCAAAAC

               
       1074 TTA
          1 TTA

       1077 TTACATGGAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22


Consensus pattern (12 bp):   
TTAAACCAAAAC
Done.