Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011303.1 Corchorus olitorius cultivar O-4 contig11336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40870

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7528--7772
43
5.8
43
88
4
374
41
26
10
21
1.85
7528--7774
84
2.9
84
95
1
451
41
25
10
22
1.86
12036--12088
15
3.5
15
84
0
61
9
35
18
35
1.84
12054--12092
12
3.2
12
92
0
60
5
38
23
33
1.77
12805--12847
18
2.3
19
80
11
54
48
2
39
9
1.48
13850--13885
2
18.0
2
94
0
63
47
0
2
50
1.15
14077--14267
96
2.0
96
88
0
283
48
10
9
30
1.71
18921--18969
2
24.5
2
100
0
98
51
48
0
0
1.00
18969--18998
2
15.0
2
100
0
60
50
0
0
50
1.00
20144--20402
126
2.1
126
86
0
356
23
43
9
23
1.83
26799--26840
21
2.0
21
100
0
84
33
28
19
19
1.96
30770--30808
2
19.5
2
94
0
69
2
0
48
48
1.15
35610--35787
32
5.5
32
93
2
261
25
16
25
32
1.96
37981--38054
27
2.7
27
91
0
130
21
18
40
18
1.91
38475--38507
14
2.4
14
100
0
66
54
18
6
21
1.64

Tables:   1

The End!