Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011307.1 Corchorus olitorius cultivar O-4 contig11340, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38123

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3234--3303
32
2.2
32
82
10
81
20
8
15
55
1.66
4668--4806
32
4.3
32
86
0
197
21
20
26
31
1.98
4668--4829
32
5.0
31
82
6
182
22
21
25
29
1.99
5170--5202
12
2.8
12
100
0
66
18
51
15
15
1.77
7761--7790
13
2.3
13
94
0
51
40
6
16
36
1.75
14982--15078
14
6.9
13
68
16
52
49
3
9
38
1.51
14973--15035
27
2.3
27
83
0
81
53
1
6
38
1.36
15000--15157
44
3.5
45
87
4
205
51
4
8
35
1.53
15141--15190
14
3.6
14
78
5
57
52
4
4
40
1.39
15134--15195
14
4.6
14
76
6
56
51
4
3
40
1.39
15134--15195
27
2.3
27
88
0
88
51
4
3
40
1.39
15168--15239
37
1.9
37
88
5
110
52
2
9
34
1.49
15288--15407
32
3.8
32
81
4
134
20
23
21
34
1.97
20347--20385
18
2.0
20
90
9
64
61
0
2
35
1.10
28769--28827
30
2.0
30
83
6
75
38
5
20
35
1.75
28780--28815
18
1.9
18
88
5
54
38
2
22
36
1.69
30173--30214
16
2.7
15
88
7
57
11
9
9
69
1.38
31483--31542
29
2.0
30
87
6
86
38
8
18
35
1.81
33048--33124
40
1.9
41
81
7
95
29
5
9
55
1.53

Tables:   1

The End!