Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011309.1 Corchorus olitorius cultivar O-4 contig11342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53458

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
546--616
25
2.8
26
81
12
92
36
18
5
39
1.74
1461--1503
22
1.9
23
86
13
63
37
4
9
48
1.56
9440--9498
22
3.0
21
67
25
56
32
18
3
45
1.66
10466--10516
21
2.4
22
80
3
59
5
19
0
74
1.02
10477--10522
20
2.2
20
88
11
67
0
21
0
78
0.76
12224--12301
39
2.0
39
97
0
147
39
5
19
35
1.74
12745--12807
27
2.3
27
83
0
72
46
26
12
14
1.80
13955--13996
15
2.8
15
88
0
57
50
11
21
16
1.77
15404--15453
17
2.9
16
80
11
55
24
22
18
36
1.95
15411--15461
17
3.1
16
80
8
57
23
21
19
35
1.96
17155--17183
2
14.5
2
100
0
58
51
0
0
48
1.00
20002--20045
14
3.1
14
96
3
79
77
2
13
6
1.07

Tables:   1

The End!