Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011314.1 Corchorus olitorius cultivar O-4 contig11347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3057
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:1602 original size:11 final size:11

Alignment explanation


    Indices: 1586--1610  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1576 AGAAAATTGT

                       
       1586 TTGTTTTTGGA
          1 TTGTTTTTGGA

                       
       1597 TTGTTTTTGGA
          1 TTGTTTTTGGA

               
       1608 TTG
          1 TTG

       1611 ATTATTCCCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64


Consensus pattern (11 bp):   
TTGTTTTTGGA

Found at i:2572 original size:15 final size:16

Alignment explanation


    Indices: 2543--2572  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2533 GTGTGAATTC

                            
       2543 AAATTGATCTTTTGAA
          1 AAATTGATCTTTTGAA

                           
       2559 AAATTGAT-TTTTGA
          1 AAATTGATCTTTTGA

       2573 TAAACTTACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47


Consensus pattern (16 bp):   
AAATTGATCTTTTGAA
Done.