Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011316.1 Corchorus olitorius cultivar O-4 contig11349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39


Found at i:914 original size:154 final size:154

Alignment explanation


    Indices: 634--1040  Score: 627
    Period size: 154  Copynumber: 2.6  Consensus size: 154

        624 ATTCGTATCA

                    *                                *                    *  
        634 ATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATTTTGGGTCT
          1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT

                                                                             
        699 ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCAAATTGGCAACCCTCAATGCTTTTCTTTCC
         66 ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCAAATTGGCAACCCTCAATGCTTTTCTTTCC

                                    
        764 ATTGTTTATGGCCTAACTATAATC
        131 ATTGTTTATGGCCTAACTATAATC

                                                                *            
        788 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGATATTTTGGGCCT
          1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT

                                               * *   *                       
        853 ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGTCAACCCTCAATGCTTTTCTTTCC
         66 ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCAAATTGGCAACCCTCAATGCTTTTCTTTCC

            *         *             
        918 TTTGTTTATGTCCTAACTATAATC
        131 ATTGTTTATGGCCTAACTATAATC

                      *           *           *           *    *    *        
        942 ATTTTGGTGATATTAGTCCACTTTGAAGTTTTTATCTCATTTGGAAAACTTTTTATATTGGGCCT
          1 ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT

                 *    *      **                
       1007 AAT-GGGGCCTATTAGTTCCGTTTTGAATCGTCTT
         66 -ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTT

       1041 AGA


Statistics
Matches: 232,  Mismatches: 20, Indels: 2
        0.91            0.08        0.01

Matches are distributed among these distances:
 154  230  0.99
 155    2  0.01

ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42


Consensus pattern (154 bp):   
ATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT
ATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCAAATTGGCAACCCTCAATGCTTTTCTTTCC
ATTGTTTATGGCCTAACTATAATC
Done.