Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011320.1 Corchorus olitorius cultivar O-4 contig11353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1186
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:17 original size:6 final size:6

Alignment explanation


    Indices: 7--33  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

          1 TGCATA

                                           
          7 TTTAAT TTTAAT TTTAAT TTTAAT TTT
          1 TTTAAT TTTAAT TTTAAT TTTAAT TTT

         34 TACACTAATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70


Consensus pattern (6 bp):   
TTTAAT

Done.