genome.fa.s11322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011322.1 Corchorus olitorius cultivar O-4 contig11355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106472

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2795--2898	36	2.8	36	79	2	109	49	10	21	19	1.78
2953--3111	77	2.1	77	82	6	191	49	16	15	18	1.80
2984--3193	39	5.4	39	76	11	205	48	15	14	21	1.81
3002--3111	38	2.9	38	88	1	166	49	16	15	19	1.80
19583--19640	26	2.4	23	78	16	64	25	1	8	63	1.32
20819--20849	16	1.9	16	100	0	62	45	12	22	19	1.84
20943--21348	41	9.9	41	87	3	512	38	19	13	28	1.89
23085--23275	66	3.1	59	79	8	177	47	12	20	19	1.81
23082--23216	66	2.1	65	91	1	216	49	11	20	17	1.78
23959--24009	16	3.2	16	100	0	102	45	17	25	11	1.83
24108--24546	41	10.7	41	86	2	522	38	17	13	30	1.89
25417--25780	75	4.8	75	83	4	410	30	15	18	35	1.92
27260--27587	75	4.4	75	82	3	367	35	18	14	30	1.91
27260--27541	75	3.8	75	85	1	370	36	17	16	30	1.92
27135--27562	149	2.8	150	81	6	493	36	18	15	29	1.92
34063--34209	74	2.0	74	95	0	267	38	25	12	22	1.90
38006--38048	21	2.0	21	86	8	61	2	18	0	79	0.85
45832--45896	28	2.2	28	84	13	78	35	10	24	29	1.89
45848--45920	28	2.5	30	82	11	96	30	13	28	27	1.94
49426--49476	26	2.0	26	88	7	77	33	13	19	33	1.91
51005--51058	19	2.6	21	77	19	60	38	3	18	38	1.69
58397--58431	18	1.9	18	94	0	61	48	5	8	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59269--59322	19	2.6	21	77	19	60	38	3	18	38	1.69
62859--62902	19	2.3	18	84	7	52	22	13	6	56	1.61
64328--64372	20	2.2	20	84	4	54	13	11	8	66	1.44
64594--64670	39	2.0	40	87	7	113	28	7	11	51	1.66
66479--66532	20	2.7	21	82	8	58	16	11	18	53	1.72
75683--75718	18	2.0	18	88	0	54	72	0	2	25	0.98
76871--76919	25	2.0	25	100	0	98	12	32	20	34	1.90
76622--80306	894	4.0	892	84	7	4954	34	27	10	27	1.90
78684--78757	25	3.0	25	89	0	121	12	31	20	36	1.89
77790--80306	945	2.7	917	92	3	4128	33	27	10	28	1.90
80010--80638	332	1.9	332	90	0	997	31	27	11	30	1.92
83987--84021	16	2.2	16	94	0	61	8	42	0	48	1.33
87355--87400	23	2.0	23	83	8	58	23	15	36	23	1.93
94539--94591	26	2.1	25	89	6	81	50	0	1	47	1.12
94539--94591	24	2.1	24	89	6	79	50	0	1	47	1.12
96073--96116	22	2.0	22	100	0	88	18	27	4	50	1.66
101564--101592	2	14.5	2	100	0	58	51	0	0	48	1.00
101514--101615	50	2.0	50	88	0	150	55	4	4	34	1.43
101514--101639	50	2.5	50	84	2	146	55	3	6	34	1.44
102502--102527	11	2.4	11	100	0	52	7	15	7	69	1.35

Tables:   1

The End!