Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011324.1 Corchorus olitorius cultivar O-4 contig11357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21168
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:62 original size:41 final size:38
Alignment explanation
Indices: 4--492 Score: 429
Period size: 41 Copynumber: 12.7 Consensus size: 38
1 TCT
* *
4 AAAAGTTCTCGAAAGTTGGCATCGGTTGGCCTTCTTTAA
1 AAAAGTTTTC-AAAGTTGGTATCGGTTGGCCTTCTTTAA
*
43 AATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCTCTAA
1 AA--AAGTTTTCAA-AGTTGGTATCGGTTGGCCTTCTTTAA
84 AAATCGAGTTTTTCAAAGTTGGTATCGGTTGGCC-T-TTT-A
1 AAA---AG-TTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
**
123 AAAAGTTTTCAAAGTTGACATCGGTTGGCCTTC--TAA
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
* * * *
159 AAATGTTTTCAGAGTTGGTATCGGTTGACCTTCTCTAA
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
* *
197 AAATTGAGCCTTTC-AAGTTGGCATCGGTTGGCCTTC--T-A
1 AAA---AG-TTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
235 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
* * *
273 AATCGAGTTTTTAAGAGTTGGTATCGGTTGGCCTTCTCTAA
1 AA--AAGTTTTCAA-AGTTGGTATCGGTTGGCCTTCTTTAA
*
314 AAATCGAGTTTTTAAAAAGTTGGTATCGGTTGGCCTTC--T-A
1 AAA---AG-TTTT-CAAAGTTGGTATCGGTTGGCCTTCTTTAA
* *
354 AAAAGTTTTCAATGTTGGCATCGGTTGGCCTTC--TAA
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
* * * **
390 AAATGTTTCCAGAGTTGGTATTAGTTGGCCTTC--T-A
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
425 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
1 AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
*
463 AATCGAA-TTTCCAAAAGTTGGTATCGGTTG
1 AA---AAGTTTTC-AAAGTTGGTATCGGTTG
493 ATCGTGTGGA
Statistics
Matches: 375, Mismatches: 39, Indels: 70
0.77 0.08 0.14
Matches are distributed among these distances:
34 4 0.01
35 98 0.26
36 64 0.17
37 4 0.01
38 16 0.04
39 8 0.02
40 20 0.05
41 101 0.27
42 26 0.07
43 32 0.09
44 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (38 bp):
AAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAA
Found at i:267 original size:76 final size:74
Alignment explanation
Indices: 15--492 Score: 424
Period size: 71 Copynumber: 6.2 Consensus size: 74
5 AAAGTTCTCG
* * * *
15 AAAGTTGGCATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCT
1 AAAGTTGGTATCGGTTGGCCTTCTCTAAAAT-GAGTTTTC-A-AGTTGGCATCGGTTGGCC-T-T
80 CTAAAAATCGAGTTTTTC
61 CTAAAAAT---G-TTTTC
*
98 AAAGTTGGTATCGGTTGGCCTT-T-TAAAA--AGTTTTCAAAGTTGACATCGGTTGGCCTTCTAA
1 AAAGTTGGTATCGGTTGGCCTTCTCTAAAATGAGTTTTC-AAGTTGGCATCGGTTGGCCTTCTAA
159 AAATGTTTTC
65 AAATGTTTTC
* * *
169 AGAGTTGGTATCGGTTGACCTTCTCTAAAAATTGAGCCTTTCAAGTTGGCATCGGTTGGCCTTCT
1 AAAGTTGGTATCGGTTGGCCTTCTCT-AAAA-TGAG-TTTTCAAGTTGGCATCGGTTGGCCTTCT
234 AAAAA-GTTTTC
63 AAAAATGTTTTC
* * *
245 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCGAGTTTTTAAGAGTTGGTATCGGTTGGCCTTCT
1 AAAGTTGGTATCGGTTGGCCTTCTCTAAAAT-GAG-TTTTCA-AGTTGGCATCGGTTGGCC-T-T
*
310 CTAAAAATCGAGTTTTTAA
61 CTAAAAAT---G-TTTT-C
329 AAAGTTGGTATCGGTTGGCC-T-TCTAAAA--AGTTTTCAATGTTGGCATCGGTTGGCCTTCTAA
1 AAAGTTGGTATCGGTTGGCCTTCTCTAAAATGAGTTTTCAA-GTTGGCATCGGTTGGCCTTCTAA
*
390 AAATGTTTCC
65 AAATGTTTTC
* ** * *
400 AGAGTTGGTATTAGTTGGCC-T-TCTAAAA--AGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTT
1 AAAGTTGGTATCGGTTGGCCTTCTCTAAAATGAGTTTTC-AAGTTGGCATCGGTTGGCCTTC-TA
*
461 AAAATCGAATTTCC
64 AAAAT-G--TTTTC
475 AAAAGTTGGTATCGGTTG
1 -AAAGTTGGTATCGGTTG
493 ATCGTGTGGA
Statistics
Matches: 343, Mismatches: 28, Indels: 55
0.81 0.07 0.13
Matches are distributed among these distances:
71 76 0.22
72 13 0.04
73 3 0.01
74 5 0.01
75 25 0.07
76 70 0.20
77 48 0.14
78 42 0.12
79 2 0.01
81 5 0.01
82 8 0.02
83 26 0.08
84 20 0.06
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (74 bp):
AAAGTTGGTATCGGTTGGCCTTCTCTAAAATGAGTTTTCAAGTTGGCATCGGTTGGCCTTCTAAA
AATGTTTTC
Found at i:349 original size:43 final size:41
Alignment explanation
Indices: 15--492 Score: 378
Period size: 35 Copynumber: 12.4 Consensus size: 41
5 AAAGTTCTCG
* * * *
15 AAAGTTGGCATCGGTTGGCCTTCTTTAAAATCAAGTTTTCA
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
* *
56 AGAGTTGGTATCGGTTGGCCTTCTCTAAAAATCGAGTTTTTC
1 AAAGTTGGTATCGGTTGGCCTTCT-TAAAAATCGAGTTTTTA
*
98 AAAGTTGGTATCGGTTGGCCTT-TT-AAAA---AG-TTTTC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
** *
133 AAAGTTGACATCGGTTGGCCTTC-TAAAAAT---G-TTTTC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
* * * **
169 AGAGTTGGTATCGGTTGACCTTCTCTAAAAATTGAGCCTTT-
1 AAAGTTGGTATCGGTTGGCCTTCT-TAAAAATCGAGTTTTTA
* * *
210 CAAGTTGGCATCGGTTGGCCTTC-T-AAAA---AG-TTTTC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
*
245 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCGAGTTTTTA
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
*
286 AGAGTTGGTATCGGTTGGCCTTCTCTAAAAATCGAGTTTTTAA
1 AAAGTTGGTATCGGTTGGCCTTCT-TAAAAATCGAGTTTTT-A
*
329 AAAGTTGGTATCGGTTGGCCTTC-T-AAAA---AG-TTTTC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
* * **
364 AATGTTGGCATCGGTTGGCCTTC-TAAAAAT---G-TTTCC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
* ** *
400 AGAGTTGGTATTAGTTGGCCTTC-T-AAAA---AG-TTTTC
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
* * **
435 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCGAATTTCCA
1 AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
476 AAAGTTGGTATCGGTTG
1 AAAGTTGGTATCGGTTG
493 ATCGTGTGGA
Statistics
Matches: 367, Mismatches: 42, Indels: 56
0.79 0.09 0.12
Matches are distributed among these distances:
34 3 0.01
35 100 0.27
36 65 0.18
37 10 0.03
38 11 0.03
39 5 0.01
40 8 0.02
41 90 0.25
42 52 0.14
43 23 0.06
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (41 bp):
AAAGTTGGTATCGGTTGGCCTTCTTAAAAATCGAGTTTTTA
Found at i:446 original size:190 final size:185
Alignment explanation
Indices: 16--492 Score: 581
Period size: 190 Copynumber: 2.5 Consensus size: 185
6 AAGTTCTCGA
*
16 AAGTTGGCATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCTC
1 AAGTTGGCATCAGTTGGCCTTC--T-AAA--AAGTTTTCAA-AGTTGGTATCGGTTGGCCTTCT-
* *
81 TAAAAATCGAGTTTTTCAAAGTTGGTATCGGTTGGCCTTTTAAAAAGTTTTCAAAGTTGACATCG
59 TTAAAATCGAGTTTTT-AAAGTTGGTATCGGTTGGCCTTTTAAAAAGTTTTAAAAGTTGACATCG
*
146 GTTGGCCTTCTAAAAATGTTTTCAGAGTTGGTATCGGTTGACCTTCTCTAAAAATTGAGCCTTTC
123 GTTGGCCTTCTAAAAATGTTTTCAGAGTTGGCATCGGTTGACCTTCTCTAAAAATT-AG-CTTTC
*
211 AAGTTGGCATCGGTTGGCCTTCTAAAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAAAAT
1 AAGTTGGCATCAGTTGGCCTTCTAAAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAAAAT
**
276 CGAGTTTTTAAGAGTTGGTATCGGTTGGCCTTCTCTAAAAATCGAGTTTTTAAAAAGTTGGTATC
66 CGAGTTTTTAA-AGTTGGTATCGGTTGGCCTT-T-T-AAAA---AG-TTTT-AAAAGTTGACATC
*
341 GGTTGGCCTTCTAAAAA-GTTTTCA-ATGTTGGCATCGGTTGGCC-T-TCTAAAAA-T-G-TTTC
122 GGTTGGCCTTCTAAAAATGTTTTCAGA-GTTGGCATCGGTTGACCTTCTCTAAAAATTAGCTTT-
399 C
185 C
* *
400 AGAGTTGGTATTAGTTGGCCTTCTAAAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAAAA
1 A-AGTTGGCATCAGTTGGCCTTCTAAAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAAAA
* **
465 TCGAATTTCCAAAAGTTGGTATCGGTTG
65 TCGAGTTT-TTAAAGTTGGTATCGGTTG
493 ATCGTGTGGA
Statistics
Matches: 257, Mismatches: 12, Indels: 31
0.86 0.04 0.10
Matches are distributed among these distances:
187 2 0.01
188 38 0.15
189 25 0.10
190 94 0.37
191 6 0.02
192 4 0.02
193 9 0.04
194 4 0.02
195 48 0.19
196 27 0.11
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (185 bp):
AAGTTGGCATCAGTTGGCCTTCTAAAAAGTTTTCAAAGTTGGTATCGGTTGGCCTTCTTTAAAAT
CGAGTTTTTAAAGTTGGTATCGGTTGGCCTTTTAAAAAGTTTTAAAAGTTGACATCGGTTGGCCT
TCTAAAAATGTTTTCAGAGTTGGCATCGGTTGACCTTCTCTAAAAATTAGCTTTC
Found at i:482 original size:231 final size:228
Alignment explanation
Indices: 15--492 Score: 696
Period size: 231 Copynumber: 2.1 Consensus size: 228
5 AAAGTTCTCG
*
15 AAAGTTGGCATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCT
1 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCT
* *
80 CTAAAAATCGAGTTTTTCAAAGTTGGTATCGGTTGGCCTTTTAAAAAGTTTTCAAAGTTGACATC
66 CTAAAAATCGAGTTTTTAAAAGTTGGTATCGGTTGGCCTTCTAAAAAGTTTTCAAAGTTGACATC
* *
145 GGTTGGCCTTCTAAAAATGTTTTCAGAGTTGGTATCGGTTGACCTTCTCTAAAAATTGAGCCTTT
131 GGTTGGCCTTCTAAAAATGTTTCCAGAGTTGGTATCAGTTGACCTTCTCTAAAAA-T-AGCCTTT
* *
210 CAAGTTGGCATCGGTTGGCCTTCTAAAAAGTTTTC
194 CAAGTTGGCATCGGTTGGCCTTCTAAAAAATTTCC
* *
245 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCGAGTTTTTAAGAGTTGGTATCGGTTGGCCTTCT
1 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCT
* *
310 CTAAAAATCGAGTTTTTAAAAAGTTGGTATCGGTTGGCCTTCTAAAAAGTTTTCAATGTTGGCAT
66 CTAAAAATCGAGTTTTT-AAAAGTTGGTATCGGTTGGCCTTCTAAAAAGTTTTCAAAGTTGACAT
* * *
375 CGGTTGGCCTTCTAAAAATGTTTCCAGAGTTGGTATTAGTTGGCC-T-TCT-AAAA-AG-TTTTC
130 CGGTTGGCCTTCTAAAAATGTTTCCAGAGTTGGTATCAGTTGACCTTCTCTAAAAATAGCCTTTC
*
435 AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCGAATTTCC
195 -AAGTTGGCATCGGTTGGCCTTC--TAAAA---AATTTCC
475 AAAAGTTGGTATCGGTTG
1 -AAAGTTGGTATCGGTTG
493 ATCGTGTGGA
Statistics
Matches: 225, Mismatches: 15, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
224 4 0.02
225 23 0.10
227 5 0.02
228 4 0.02
229 3 0.01
230 85 0.38
231 101 0.45
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (228 bp):
AAAGTTGGTATCGGTTGGCCTTCTTTAAAATCAAGTTTTCAAGAGTTGGTATCGGTTGGCCTTCT
CTAAAAATCGAGTTTTTAAAAGTTGGTATCGGTTGGCCTTCTAAAAAGTTTTCAAAGTTGACATC
GGTTGGCCTTCTAAAAATGTTTCCAGAGTTGGTATCAGTTGACCTTCTCTAAAAATAGCCTTTCA
AGTTGGCATCGGTTGGCCTTCTAAAAAATTTCC
Found at i:2264 original size:2 final size:2
Alignment explanation
Indices: 2257--2284 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2247 TAATCACTTA
2257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2285 GAAAAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2653 original size:14 final size:14
Alignment explanation
Indices: 2610--2653 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 14
2600 AATAGGCAAG
2610 CAATCAAAGCAATAA
1 CAATCAAAGCAA-AA
2625 TCAATCAAAGCAAAA
1 -CAATCAAAGCAAAA
2640 CAATGCAAAG-AAAA
1 CAAT-CAAAGCAAAA
2654 TAAATAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.30
15 7 0.26
16 12 0.44
ACGTcount: A:0.61, C:0.18, G:0.09, T:0.11
Consensus pattern (14 bp):
CAATCAAAGCAAAA
Found at i:5313 original size:15 final size:16
Alignment explanation
Indices: 5289--5328 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
5279 AGAGGTTGAA
*
5289 AGAAAGCAATTAAAC-
1 AGAAAACAATTAAACT
5304 AGAAAACAATTAAACT
1 AGAAAACAATTAAACT
5320 AGAAAACAA
1 AGAAAACAA
5329 AGCAAACTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12
Consensus pattern (16 bp):
AGAAAACAATTAAACT
Found at i:11647 original size:3 final size:3
Alignment explanation
Indices: 11639--11668 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
11629 CCGGTAGCCG
*
11639 GAA GAA GAA TAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
11669 AAAAGGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:14193 original size:20 final size:23
Alignment explanation
Indices: 14151--14202 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
14141 CTAATGAAAT
*
14151 TTATTATATATATATATCATAAA
1 TTATAATATATATATATCATAAA
*
14174 -TATAATATATATA-AT-TTAAA
1 TTATAATATATATATATCATAAA
14194 TTATAATAT
1 TTATAATAT
14203 CATAATCGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 10 0.38
22 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTATAATATATATATATCATAAA
Found at i:14671 original size:16 final size:16
Alignment explanation
Indices: 14652--14741 Score: 65
Period size: 16 Copynumber: 5.6 Consensus size: 16
14642 TTCGGGCTGG
14652 TTCGGGTTCGGGTTTT
1 TTCGGGTTCGGGTTTT
* *
14668 TTCGGATTCGGGTATT
1 TTCGGGTTCGGGTTTT
** **
14684 TTCGGCCTCGGGTTAAG
1 TTCGGGTTCGGGTT-TT
* *
14701 TT-GGGTTTGGGTTAT
1 TTCGGGTTCGGGTTTT
* * *
14716 GTCAGGTTCGGGTATT
1 TTCGGGTTCGGGTTTT
14732 TTCGGGTTCG
1 TTCGGGTTCG
14742 ATCTCGGGAA
Statistics
Matches: 54, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
15 2 0.04
16 50 0.93
17 2 0.04
ACGTcount: A:0.08, C:0.13, G:0.37, T:0.42
Consensus pattern (16 bp):
TTCGGGTTCGGGTTTT
Found at i:14939 original size:13 final size:13
Alignment explanation
Indices: 14916--14946 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14906 AAGTTTATTG
14916 ATAAT-ATATAAT
1 ATAATAATATAAT
14928 ATAATAATATAAT
1 ATAATAATATAAT
14941 ATAATA
1 ATAATA
14947 TTATTATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:15253 original size:31 final size:33
Alignment explanation
Indices: 15218--15289 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 33
15208 TAAATTATTG
*
15218 CAAATTAAAAT-AAAT-TAAGCATTAAATTAAA
1 CAAATTAAAATAAAATGAAAGCATTAAATTAAA
* **
15249 CAAA-T-AATTAAAATGAAAGTGTTAAATTAAA
1 CAAATTAAAATAAAATGAAAGCATTAAATTAAA
15280 CAAATTAAAA
1 CAAATTAAAA
15290 GCTGATAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
29 3 0.09
30 5 0.16
31 21 0.66
32 1 0.03
33 2 0.06
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (33 bp):
CAAATTAAAATAAAATGAAAGCATTAAATTAAA
Found at i:15531 original size:2 final size:2
Alignment explanation
Indices: 15526--15564 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
15516 TTATATAAGT
*
15526 TA TA TA TA TA TA TA TA TA TA TA TA TC TA -A T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15565 TTAGTAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Done.