Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011326.1 Corchorus olitorius cultivar O-4 contig11359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118328

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28028--28061
16
2.1
16
89
10
52
52
5
0
41
1.25
28503--28535
14
2.3
15
89
5
50
39
18
21
21
1.93
29621--29655
2
17.5
2
88
11
54
48
2
0
48
1.16
33977--34047
23
3.1
23
100
0
142
30
8
12
47
1.71
36553--36615
3
20.7
3
93
3
108
65
0
0
34
0.93
37768--37814
22
2.1
22
84
7
60
61
2
12
23
1.42
37691--37875
93
2.0
93
89
0
280
52
2
12
32
1.51
38567--38594
1
28.0
1
100
0
56
100
0
0
0
0.00
40396--40463
34
2.0
34
100
0
136
52
14
2
29
1.56
44922--44983
32
1.9
32
93
0
106
20
16
17
45
1.86
45812--45866
20
2.8
20
100
0
110
54
16
16
12
1.71
46654--46679
3
8.7
3
100
0
52
69
0
30
0
0.89
47305--47335
2
15.5
2
100
0
62
48
0
0
51
1.00
48921--49002
43
1.9
43
94
0
146
37
12
9
40
1.76
48923--49015
43
2.2
43
88
0
132
37
11
9
40
1.75
49071--49156
42
2.0
42
100
0
172
31
6
19
41
1.78
54450--54474
8
3.1
8
100
0
50
12
12
40
36
1.79
59272--59618
178
1.9
178
81
3
421
37
17
13
31
1.89
64043--64087
23
2.0
21
83
8
54
48
4
4
42
1.43
66265--66324
31
2.0
30
90
3
93
56
11
13
18
1.66
73555--73581
11
2.5
11
100
0
54
48
14
7
29
1.71
77350--77383
17
2.0
17
88
0
50
23
17
26
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78703--78730
8
3.5
8
100
0
56
89
0
0
10
0.49
79591--79683
4
23.2
4
100
0
186
24
0
24
50
1.49
80478--80568
7
13.0
7
100
0
182
28
28
14
28
1.95
82933--82963
9
3.4
9
95
0
53
35
0
6
58
1.24
82964--82993
6
5.0
6
100
0
60
33
0
33
33
1.58
83074--83114
7
5.9
7
88
0
64
36
0
31
31
1.58
83114--83151
8
4.8
8
100
0
76
13
21
52
13
1.73
84555--84599
13
3.2
13
81
12
54
17
8
28
44
1.79
100698--100751
22
2.5
22
90
0
81
37
31
11
20
1.88
102714--102739
6
4.3
6
100
0
52
15
30
19
34
1.93
105358--105424
16
4.2
16
69
17
50
53
26
10
8
1.64
105444--105482
20
2.0
20
100
0
78
53
5
5
35
1.45
105631--105714
32
2.7
32
81
1
89
36
35
9
17
1.83
105652--105716
32
2.0
32
87
0
94
36
35
10
16
1.84
115338--115362
12
2.1
12
100
0
50
24
36
40
0
1.55

Tables:   1

The End!