Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011328.1 Corchorus olitorius cultivar O-4 contig11361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3491
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Found at i:3193 original size:15 final size:14

Alignment explanation


    Indices: 3170--3219  Score: 55
    Period size: 15  Copynumber: 3.4  Consensus size: 14

       3160 TGTCGAGTAT

                           
       3170 GACAAAAGTGAATAC
          1 GACAAAAGTGAA-AC

                *          
       3185 GACATAAGTGGAAAC
          1 GACAAAAGT-GAAAC

                *          
       3200 GACACAAGTGCAAAC
          1 GACAAAAGTG-AAAC

                 
       3215 GACAA
          1 GACAA

       3220 GTTGTGAGTA


Statistics
Matches: 30,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  14    1  0.03
  15   26  0.87
  16    3  0.10

ACGTcount: A:0.50, C:0.18, G:0.22, T:0.10


Consensus pattern (14 bp):   
GACAAAAGTGAAAC
Done.