Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011331.1 Corchorus olitorius cultivar O-4 contig11364, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4009
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:1611 original size:50 final size:47

Alignment explanation


    Indices: 1481--1623  Score: 155
    Period size: 49  Copynumber: 3.0  Consensus size: 47

       1471 CAAGCAATCC

                *                              *          *  
       1481 TTTACTTTTCA-CTGCACTTTTTCTCAATTTTTACTACAAAATTGAACT
          1 TTTAATTTTCATC-GCACTTTTTCTCAATTTTTA-GACAAAATTGATCT

                     *   *                                     
       1529 TTT-ATTTTTACTTGCATCTTTTTCTCAATTTTTAAAGACAAAATTGATCT
          1 TTTAATTTTCA-TCGCA-CTTTTTCTCAATTTTT--AGACAAAATTGATCT

                                  *         *            
       1579 TTTAATTTTCATCGCACTTTTTATCAATTTTTTGACAAAATTGAT
          1 TTTAATTTTCATCGCACTTTTTCTCAATTTTTAGACAAAATTGAT

       1624 TGGCACGCTC


Statistics
Matches: 80,  Mismatches: 9, Indels: 13
        0.78            0.09        0.13

Matches are distributed among these distances:
  47   17  0.21
  48    6  0.08
  49   31  0.39
  50   19  0.24
  51    7  0.09

ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50


Consensus pattern (47 bp):   
TTTAATTTTCATCGCACTTTTTCTCAATTTTTAGACAAAATTGATCT
Done.