Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011333.1 Corchorus olitorius cultivar O-4 contig11366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49330

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4565--4601
14
2.6
14
95
0
65
29
32
35
2
1.72
7688--7723
19
1.9
18
88
5
54
41
8
22
27
1.82
9517--9567
25
2.0
25
92
0
84
31
11
19
37
1.88
11731--11804
30
2.5
30
90
0
112
27
14
17
40
1.89
20770--20842
27
2.7
27
82
2
85
17
13
27
41
1.88
20772--20853
26
3.1
26
78
1
92
18
14
26
40
1.89
28269--28337
34
1.9
35
91
8
113
24
15
8
50
1.72
31716--31908
4
48.0
4
67
16
69
24
9
0
65
1.27
31723--31886
12
14.6
12
70
14
82
25
10
0
63
1.30
32376--32421
5
8.8
5
90
4
65
60
0
0
39
0.97
32866--32896
13
2.5
13
94
5
55
61
0
0
38
0.96
33165--33237
31
2.4
31
76
17
80
61
8
4
26
1.42
34259--34289
2
15.5
2
100
0
62
48
0
0
51
1.00
36937--36974
7
5.4
7
100
0
76
44
0
13
42
1.43
42871--43090
22
10.0
22
73
7
117
34
15
10
40
1.81
43014--43080
23
3.0
23
84
2
82
40
17
10
31
1.84
43120--43429
22
14.4
22
75
10
200
35
14
9
40
1.78
43478--43559
34
2.4
34
95
0
146
37
20
9
31
1.85
43545--43697
66
2.3
66
81
2
182
34
15
9
40
1.80
43548--43961
22
18.7
22
66
18
114
34
15
9
40
1.79
43998--44194
22
8.9
22
71
9
87
36
17
9
36
1.82
44072--44163
22
4.2
22
77
13
91
34
16
10
38
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44041--44198
66
2.4
66
80
5
169
36
17
9
36
1.83
43966--44195
22
10.5
22
66
13
80
36
15
9
37
1.80
44652--44699
15
3.2
14
82
17
53
54
2
2
41
1.24
44657--44702
14
3.1
15
79
17
51
52
2
0
45
1.13
45021--45057
19
1.9
19
100
0
74
16
37
13
32
1.87

Tables:   1

The End!