Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011334.1 Corchorus olitorius cultivar O-4 contig11367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2313
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Found at i:294 original size:154 final size:154
Alignment explanation
Indices: 13--1129 Score: 1681
Period size: 154 Copynumber: 7.3 Consensus size: 154
3 GTTTTTAATA
* * *
13 GTCTTCGATTTGGCAAACCTCTAA-ACTTTACTTTCCATAT-TTTATGGACTAAATATAATCATT
1 GTCTTCGATTTGGCAAACCTC-AATGCTTTTCTTTCCAT-TGTTTATGGACTAACTATAATCATT
* * *
76 TTGGTGACATTAGTCCACTGTGAAATTTTTAGCTCAGTTGGAACACTTGTTATTTTGGGCCTATC
64 TTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATC
141 GGGGCCCATTAGTGACATATTGAATC
129 GGGGCCCATTAGTGACATATTGAATC
*
167 CTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
* * * * *
232 GGTGAGATTAGTCCACTATAAAGTTTTTAGCTCATTTGGAACACTTATTATTTGGGGCCTATCGA
66 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
* *
297 GGCCCATTAGTGACGTTTTGAATC
131 GGCCCATTAGTGACATATTGAATC
* *
321 GTTTTCGATTTGGCAAACCTCAATGTTTTTCTTTCCATTGTTTATGGACTAACTATAATC-TTTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
* * *
385 GGGTGAGATTACTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCTTATCG
66 -GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCG
* * *
450 GGGCCCATTAGT-TC-TGTTATGAATA
130 GGGCCCATTAGTGACAT-AT-TGAATC
* *
475 GTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATAT-TTTATGGACTAAATATAATCATTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCAT-TGTTTATGGACTAACTATAATCATTT
* *
539 TGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAC-TGTTATTTTGGGTCTATCG
65 TGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCG
*
603 GGACCCATTAGTGACATATTGAATC
130 GGGCCCATTAGTGACATATTGAATC
* * *
628 TTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATAATTTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
*
693 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGGACACTTGTTATTTTGGGCCTATCGG
66 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
*
758 GGCCCATTAGTGACACATTGAATC
131 GGCCCATTAGTGACATATTGAATC
* *
782 CTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
** * *
847 GGTGAGATTAGTAAACTGTGAAGTTTTTAGATTCATTTGGAACACTTGTTATTATGGGCCTATCG
66 GGTGAGATTAGTCCACTGTGAAGTTTTTAG-CTCATTTGGAACACTTGTTATTTTGGGCCTATCG
* * *
912 GGGCCCATTAGTGACGTTTTTAATC
130 GGGCCCATTAGTGACATATTGAATC
*
937 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
* * *
1002 GATCAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTGTCGG
66 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
1067 GGCCCATTAGTGACATATTGAATC
131 GGCCCATTAGTGACATATTGAATC
* * * *
1091 ATCTTCGACTTAGCAAACCTCAATGATTTTCTTTCCATT
1 GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
1130 CTTTCCATTG
Statistics
Matches: 875, Mismatches: 76, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
152 2 0.00
153 145 0.17
154 580 0.66
155 148 0.17
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (154 bp):
GTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTT
GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGG
GGCCCATTAGTGACATATTGAATC
Found at i:996 original size:462 final size:461
Alignment explanation
Indices: 1--1129 Score: 1780
Period size: 461 Copynumber: 2.4 Consensus size: 461
* *
1 CTGTTTTTAATAGTCTTCGATTTGGCAAACCTCTAAACTTTACTTTCCATATTTTATGGACTAAA
1 CTGTTTTTAATAGTCTTCGATTTGGCAAACCTC-AAGCTTTTCTTTCCATATTTTATGGACTAAA
* *
66 TATAATCATTTTGGTGACATTAGTCCACTGTGAAATTTTTAGCTCAGTTGGAACACTTGTTATTT
65 TATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
*
131 TGGGCCTATCGGGGCCCATTAGTGACATATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTT
130 TGGGCCTATCGGGGCCCATTAGTGACATATTGAATCATCTTCGATTTGGCAAACCTCAATGCTTT
*
196 TCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTATAAAGTTTTTA
195 TCTTTCCATTGTTTATGGACTAACTATAATAATTTTGGTGAGATTAGTCCACTATAAAGTTTTTA
*** * *
261 GCTCATTTGGAACACTTATTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTTTT
260 GCTCATTTGGAACACTTATTATTTGGGGCCTATCGAGGCCCATTAGTGACACATTGAATCCTCTT
*
326 CGATTTGGCAAACCTCAATGTTTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGA
325 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGA
** * *
391 GATTACTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGGCTTATCGGGGCCC
390 GATTACTAAACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTATGGGCCTATCGGGGCCC
*
456 ATTAGTT
455 ATTAGTA
* *
463 CTGTTATGAATAGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATATTTTATGGACTAAA
1 CTGTTTTTAATAGTCTTCGATTTGGCAAACCTC-AAGCTTTTCTTTCCATATTTTATGGACTAAA
528 TATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAC-TGTTATTT
65 TATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTT
* * * *
592 TGGGTCTATCGGGACCCATTAGTGACATATTGAATCTTCTTCGATTTGGCAAACCTCAAAGCTTT
130 TGGGCCTATCGGGGCCCATTAGTGACATATTGAATCATCTTCGATTTGGCAAACCTCAATGCTTT
* *
657 TCTTTCCATTGTTTATGGACTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTA
195 TCTTTCCATTGTTTATGGACTAACTATAATAATTTTGGTGAGATTAGTCCACTATAAAGTTTTTA
* * * *
722 GCTCATTTGGGACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACACATTGAATCCTCTT
260 GCTCATTTGGAACACTTATTATTTGGGGCCTATCGAGGCCCATTAGTGACACATTGAATCCTCTT
*
787 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-GGTG
325 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATC-TTTTGGGTG
* * *
851 AGATTAGTAAACTGTGAAGTTTTTAGATTCATTTGGAACACTTGTTATTATGGGCCTATCGGGGC
389 AGATTACTAAACTGTGAAGTTTTTAG-CTCATTTGCAACACTTGTTATTATGGGCCTATCGGGGC
916 CCATTAGTGA
453 CCATTAGT-A
* *
926 C-GTTTTTAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCAT-TGTTTATGGCCTAA
1 CTGTTTTTAATAGTCTTCGATTTGGCAAACCTCAA-GCTTTTCTTTCCATAT-TTTATGGACTAA
* * * *
989 CTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT
64 ATATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATT
* * * *
1054 TTGGGCCTGTCGGGGCCCATTAGTGACATATTGAATCATCTTCGACTTAGCAAACCTCAATGATT
129 TTGGGCCTATCGGGGCCCATTAGTGACATATTGAATCATCTTCGATTTGGCAAACCTCAATGCTT
1119 TTCTTTCCATT
194 TTCTTTCCATT
1130 CTTTCCATTG
Statistics
Matches: 612, Mismatches: 49, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
461 270 0.44
462 266 0.43
463 76 0.12
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (461 bp):
CTGTTTTTAATAGTCTTCGATTTGGCAAACCTCAAGCTTTTCTTTCCATATTTTATGGACTAAAT
ATAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
GGGCCTATCGGGGCCCATTAGTGACATATTGAATCATCTTCGATTTGGCAAACCTCAATGCTTTT
CTTTCCATTGTTTATGGACTAACTATAATAATTTTGGTGAGATTAGTCCACTATAAAGTTTTTAG
CTCATTTGGAACACTTATTATTTGGGGCCTATCGAGGCCCATTAGTGACACATTGAATCCTCTTC
GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCTTTTGGGTGAG
ATTACTAAACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTATGGGCCTATCGGGGCCCA
TTAGTA
Found at i:1363 original size:254 final size:253
Alignment explanation
Indices: 911--1383 Score: 793
Period size: 254 Copynumber: 1.9 Consensus size: 253
901 TGGGCCTATC
* *
911 GGGGCCCATTAGTGACGTTTTTAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAATGCTTTTCTTTCCATT
* *
976 GTTTATGGCCTAACTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
66 GTTTAGGGCCTAACTATAATCATTTTGATAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* *
1041 AACACTTGTTATTTTGGGCCTGTCGGGGCCCATTAGTGACATATTGAATCATCTTCGACTTAGCA
131 AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACACATTGAATCATCTTCGACTTAGCA
1106 AACCTCAATGATTTTCTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTT
196 AACCTCAATGATTTTCTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTT
**
1164 GGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAATTGCTTTTCTTTCCAT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAA-TGCTTTTCTTTCCAT
* * * *
1229 TGTTTAGGGGCTAAGTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCCTTTG
65 TGTTTAGGGCCTAACTATAATCATTTTGATAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
* * *
1294 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGC
130 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACACATTGAATCATCTTCGACTTAGC
*
1359 AAACCTCAATGCTTTTCTTTCCATT
195 AAACCTCAATGATTTTCTTTCCATT
1384 GTTTATGGCC
Statistics
Matches: 203, Mismatches: 16, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
253 45 0.22
254 158 0.78
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (253 bp):
GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAATGCTTTTCTTTCCATT
GTTTAGGGCCTAACTATAATCATTTTGATAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
AACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACACATTGAATCATCTTCGACTTAGCA
AACCTCAATGATTTTCTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTT
Found at i:1453 original size:154 final size:154
Alignment explanation
Indices: 1164--2307 Score: 1558
Period size: 154 Copynumber: 7.4 Consensus size: 154
1154 ACTTCGATTT
** *
1164 GGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAATTGCTTTTCTTTCCAT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA-TGCTTTTCTTTCCAT
* * * * *
1229 TGTTTAGGGGCTAAGTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCCTTTG
65 TGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
1294 GAACACTTGTTATTTTGGGCCTATC
130 GAACACTTGTTATTTTGGGCCTATC
*** *
1319 GGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
* * *
1384 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTATCTCATTTGC
66 GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* *
1449 AACACTTGTTATTTTGGGCTTAAC
131 AACACTTGTTATTTTGGGCCTATC
* * * * * ** *
1473 GGGGCCCAATAGTTAGGTTTTGAATAGTCTTCGATTTGGCAAACCTTAAAACTTTACTTTCCATA
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCAT-
* * * *
1538 T-TTTATGGACTAAATGTAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGCTAATTTG
65 TGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
1602 GAACAC-TGTTATTTTGGGCCTATC
130 GAACACTTGTTATTTTGGGCCTATC
* * * * *
1626 GGGGCCCATTAGTGACATATGGAATCCTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
* * *
1691 GTTTATGGACTAACTATCATTATTTTGGTGAGATTAGTTCACTGTGAAGTTTTTAGCT-AGTTTG
66 GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA-TTTG
*
1755 AAACACTTGTTATTTTGGGCCTATC
130 GAACACTTGTTATTTTGGGCCTATC
* *** * * *
1780 GGGGCCCATTACTGACACATTGAATCCTCTTTGATTTGGCAATCCTCAATGCTTTTCTTTCCATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
* ** * *
1845 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTAAACTGTGAAGTTTTTAGCTCCTTTGA
66 GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* *
1910 AACACTTGTTATTTTGGGACTTTC
131 AACACTTGTTATTTTGGGCCTATC
* ** * *
1934 GGAGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAGGCTTTTCTTTCAATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
* * * *
1999 GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACCGTGAAGCTTTTAGCACATTTGC
66 GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* *
2064 AACAGTTGTTATTTTGGGCTTATC
131 AACACTTGTTATTTTGGGCCTATC
* *
2088 GGGGCCCATTAGT-TCTGTTTTGAATAGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCAT
1 GGGGCCCATTAGTGAC-GTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCAT
* * *
2152 TGTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTAAAGATTTTAGCTCATTTG
65 TGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
* *
2217 GAACACATGTTATTTTGGGCTTATC
130 GAACACTTGTTATTTTGGGCCTATC
* ** *
2242 GAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGAGTTGGCAAACCTCAATGCTTTTCTTTCCATT
1 GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
2307 G
66 G
2308 GTTAGG
Statistics
Matches: 872, Mismatches: 110, Indels: 15
0.87 0.11 0.02
Matches are distributed among these distances:
152 2 0.00
153 130 0.15
154 696 0.80
155 44 0.05
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (154 bp):
GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATT
GTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
AACACTTGTTATTTTGGGCCTATC
Found at i:1535 original size:408 final size:408
Alignment explanation
Indices: 775--1536 Score: 1179
Period size: 408 Copynumber: 1.9 Consensus size: 408
765 TAGTGACACA
* *
775 TTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
1 TTGAATCCTCTTCGAGTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAGGGCCTAACTATAA
* *
840 TCATTTTGGTGAGATTAGTAAACTGTGAAGTTTTTAGATTCATTTGGAACACTTGTTATTATGGG
66 TCATTTTGGTAAGATTAGTAAACTGTGAAGTTTTTAGACTCATTTGGAACACTTGTTATTATGGG
*** * *
905 CCTATCGGGGCCCATTAGTGACGTTTTTAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
131 CCTATCGGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
970 TCCATTGTTTATGGCCTAACTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCTC
196 TCCATTGTTTATGGCCTAACTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCTC
* ** *
1035 ATTTGGAACACTTGTTATTTTGGGCCTGTCGGGGCCCATTAGTGACATATTGAATCATCTTCGAC
261 ATTTGCAACACTTGTTATTTTGGGCCTAACGGGGCCCAATAGTGACATATTGAATCATCTTCGAC
* *
1100 TTAGCAAACCTCAATGATTTTCTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTTG
326 TTAGCAAACCTCAATAATTTACTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTTG
1165 GGGCCCATTAGTTCCGTT
391 GGGCCCATTAGTTCCGTT
* * *
1183 TTGAATCGTCTTCGAGTTGGCAAACCTCAATTGCTTTTCTTTCCATTGTTTAGGGGCTAAGTATA
1 TTGAATCCTCTTCGAGTTGGCAAACCTCAA-TGCTTTTCTTTCCATTGTTTAGGGCCTAACTATA
** * *
1248 ATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAG-CTCCTTTGGAACACTTGTTATTTTGG
65 ATCATTTTGGTAAGATTAGTAAACTGTGAAGTTTTTAGACTCATTTGGAACACTTGTTATTATGG
1312 GCCTATCGGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCT
130 GCCTATCGGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCT
* * *
1377 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTATCT
195 TTCCATTGTTTATGGCCTAACTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCT
* * ** *
1442 CATTTGCAACACTTGTTATTTTGGGCTTAACGGGGCCCAATAGTTAGGTTTTGAAT-AGTCTTCG
260 CATTTGCAACACTTGTTATTTTGGGCCTAACGGGGCCCAATAGTGACATATTGAATCA-TCTTCG
* * *
1506 ATTTGGCAAACCTTAA-AACTTTACTTTCCAT
324 ACTTAGCAAACCTCAATAA-TTTACTTTCCAT
1537 ATTTTATGGA
Statistics
Matches: 318, Mismatches: 33, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
407 2 0.01
408 250 0.79
409 66 0.21
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (408 bp):
TTGAATCCTCTTCGAGTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAGGGCCTAACTATAA
TCATTTTGGTAAGATTAGTAAACTGTGAAGTTTTTAGACTCATTTGGAACACTTGTTATTATGGG
CCTATCGGGGCCCATTAGTGACACATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
TCCATTGTTTATGGCCTAACTATAATCATTTTGATCAGATTAGTCCACTGTGAAGTTTTTAGCTC
ATTTGCAACACTTGTTATTTTGGGCCTAACGGGGCCCAATAGTGACATATTGAATCATCTTCGAC
TTAGCAAACCTCAATAATTTACTTTCCATTCTTTCCATTGTTTGGTAAGATTATACTTCGATTTG
GGGCCCATTAGTTCCGTT
Done.