Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011337.1 Corchorus olitorius cultivar O-4 contig11370, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9596
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:438 original size:67 final size:67

Alignment explanation


    Indices: 330--479  Score: 291
    Period size: 67  Copynumber: 2.2  Consensus size: 67

        320 ATCAATTAGA

                                           *                                 
        330 GTGGTGAATCTGTATCTCTTGTTGATTTGGGGCTAAAAGAAGCTTGTTCATCTTGTGAATTCCAC
          1 GTGGTGAATCTGTATCTCTTGTTGATTTGGGACTAAAAGAAGCTTGTTCATCTTGTGAATTCCAC

              
        395 TT
         66 TT

                                                                             
        397 GTGGTGAATCTGTATCTCTTGTTGATTTGGGACTAAAAGAAGCTTGTTCATCTTGTGAATTCCAC
          1 GTGGTGAATCTGTATCTCTTGTTGATTTGGGACTAAAAGAAGCTTGTTCATCTTGTGAATTCCAC

              
        462 TT
         66 TT

                            
        464 GTGGTGAATCTGTATC
          1 GTGGTGAATCTGTATC

        480 AAGTTGTGTT


Statistics
Matches: 82,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  67   82  1.00

ACGTcount: A:0.21, C:0.15, G:0.24, T:0.40


Consensus pattern (67 bp):   
GTGGTGAATCTGTATCTCTTGTTGATTTGGGACTAAAAGAAGCTTGTTCATCTTGTGAATTCCAC
TT
Done.