Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011342.1 Corchorus olitorius cultivar O-4 contig11375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1956
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35


Found at i:393 original size:33 final size:33

Alignment explanation


    Indices: 307--452  Score: 122
    Period size: 33  Copynumber: 4.4  Consensus size: 33

        297 AAGAGTAATT

                           *          *        
        307 CTAAATCTGTTTTAGATGTTGTTTTGCGAT-AATA
          1 CTAAATCTGTTTTAGGTGTTG-TTTGTGATGAA-A

                 *  **                      * 
        341 CTAAACCTAATTT-GAGTGTTGTTTGTGATGACA
          1 CTAAATCTGTTTTAG-GTGTTGTTTGTGATGAAA

                                             
        374 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
          1 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA

                                * **            
        407 C-AAATTCTGTTTT-GGATGCTAATTGTGATGAAAA
          1 CTAAA-TCTGTTTTAGG-TGTTGTTTGTGATG-AAA

                         
        441 C-AAATCTGTTTT
          1 CTAAATCTGTTTT

        453 GGTTGATCAT


Statistics
Matches: 93,  Mismatches: 13, Indels: 13
        0.78            0.11        0.11

Matches are distributed among these distances:
  32    5  0.05
  33   64  0.69
  34   24  0.26

ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43


Consensus pattern (33 bp):   
CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
Done.