Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011353.1 Corchorus olitorius cultivar O-4 contig11386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51417

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5474--5628
7
22.0
7
97
1
283
29
12
0
58
1.35
7084--7130
24
2.0
24
83
8
60
14
10
4
70
1.31
16072--16110
18
2.2
18
86
9
53
58
7
0
33
1.26
16136--16284
50
3.0
50
78
10
153
41
3
16
38
1.64
17315--17868
40
13.8
39
78
6
409
15
26
19
38
1.92
17319--17868
81
6.8
80
82
4
502
15
26
19
38
1.91
22274--22598
35
9.3
35
78
3
350
30
21
18
29
1.97
22274--22598
70
4.7
69
88
3
420
30
21
18
29
1.97
22591--22751
54
3.0
54
85
2
191
33
19
16
31
1.93
22800--23180
50
7.7
49
76
9
321
37
18
16
27
1.92
22917--23224
93
3.2
93
74
9
323
34
20
16
28
1.94
22824--23228
193
2.1
194
91
0
650
36
19
16
27
1.93
23319--23370
26
2.0
26
88
0
77
34
21
23
21
1.97
23405--23798
35
11.2
35
75
4
292
41
20
19
19
1.91
23405--23798
71
5.6
70
80
5
330
41
20
19
19
1.91
23508--23813
106
2.9
104
79
7
305
40
20
19
19
1.91
23440--23769
141
2.3
142
78
3
326
40
21
19
17
1.91
26178--26237
14
4.3
13
89
8
75
38
15
6
40
1.73
26178--26229
27
1.9
27
88
7
79
36
15
5
42
1.71
26202--26237
15
2.5
15
90
4
56
38
13
8
38
1.75
44273--44421
50
3.0
51
75
10
146
40
4
16
39
1.67
45485--46000
40
12.8
39
76
9
342
14
26
20
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45651--45952
80
3.8
80
88
3
400
14
26
20
38
1.91
45684--46000
120
2.6
118
84
9
385
14
27
19
38
1.91
51288--51386
33
3.0
33
84
10
114
43
23
8
25
1.81
51323--51417
33
2.9
33
82
6
95
44
21
9
25
1.82

Tables:   1

The End!