Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011355.1 Corchorus olitorius cultivar O-4 contig11388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4619

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2312--2342
10
3.2
10
95
4
55
64
9
19
6
1.45
3305--3348
20
2.1
22
87
8
65
22
20
4
52
1.65
3385--3576
22
9.0
22
78
14
183
24
17
5
52
1.67
3385--3507
45
2.8
44
86
4
167
23
17
6
52
1.68
3385--3511
67
1.9
67
87
6
186
23
18
6
51
1.68
3492--3526
15
2.3
15
95
0
61
31
17
5
45
1.71
3469--3546
37
2.1
36
83
6
95
26
15
6
51
1.67
3506--3568
21
3.0
21
75
11
65
25
15
4
53
1.61
3455--3596
58
2.4
58
82
11
175
26
17
4
51
1.65
3623--3667
14
3.1
15
78
12
58
24
26
0
48
1.51
3592--3695
28
3.7
27
78
13
104
25
22
2
50
1.63
3671--3777
35
3.1
35
87
5
162
21
20
2
55
1.56
3555--3868
168
1.9
166
82
8
393
24
19
4
52
1.63
3813--3875
21
3.0
21
71
19
58
20
17
6
55
1.63
3931--3994
3
21.7
3
93
3
112
0
31
0
68
0.90

Tables:   1

The End!